Session: 602. Myeloid Oncogenesis: Basic: Poster II
Hematology Disease Topics & Pathways:
Fundamental Science, Research, Acute Myeloid Malignancies, AML, Hematopoiesis, Diseases, Myeloid Malignancies, Biological Processes
To determine the impact of STAG2 mutation in NPM1c mutant background, we generated STAG2 KO (refer as KO) OCI-AML3 cells. Comparing to isogeneic non-targeting (refer as NT) control cells, KO cells have slower proliferation rate despite normal cell cycle profile. There is an increased cell surface expression of stem cell associated markers, such as CD34 and ESAM. To obtain molecular signature, we performed RNAseq and ATACseq. In RNAseq, we found that the KO cells have increased signature of DNA damage response as previously reported, whereas ATACseq showed an increased chromatin accessibility in the KO compared to NT, especially at the HOXA locus. Among the more accessible regions, motif analysis identified FLI1 as the predicted top transcription factor (TF) to bind. As NPM1c can directly bind chromatin, we analyzed published NPM1c Cut&Run data and identified significant overlap of the NPM1c binding within the more accessible regions of KO cells (33%), suggesting synergistic chromatin remodeling between STAG2 and NPM1c mutations. Transcriptomically, GSEA analysis showed increased expression of FLI1 targeted pathways, suggesting FLI1 hyperactivity as the result of abnormal chromatin remodeling in the KO cells. We are currently performing genetic silencing of FLI1 via siRNA as well as pharmacologically inhibition to determine whether FLI1 would be a therapeutic target in STAG2 KO leukemia.
Next, we generated dual Stag2ΔNpm1c/+ murine models with tamoxifen inducible UbcCreERT2 to establish the functional effects on hematopoiesis. After 4 weeks, LSK cells (Lin-Sca1+Kit+) are increased in Stag2ΔNpm1c/+ double mutant mice. Within LSK cells, Stag2ΔNpm1c/+ but not Npm1c/+ has marked expansion of the myeloid biased MPP2 (LSK+Flk2-Cd150+Cd48+) and MPP3 (LSK+Flk2-Cd150-Cd48+) compartment. Transplantation of Stag2ΔNpm1c/+ LSK cells showed impaired reconstitution capacity and myeloid biased output in primary and secondary transplantation. Molecularly, we performed bulk ATACseq on MPP3 and found Stag2ΔNpm1c/+ cells have increased accessibility compared to Npm1c/+ cells. Motif analysis identified Fli1 as the top TF in Stag2ΔNpm1c/+, which confirms the observation in STAG2 KO OCI-AML3 cell lines. When aged, mice carrying Stag2ΔNpm1c/+ developed highly penetrant acute leukemia with macrocytic anemia and thrombocytopenia. Morphological examination of the bone marrow identified hypolobated megakaryocytes and dyserythropoiesis, which suggests myelodysplastic related changes. The leukemia is transplantable, and the phenotype of the recipients recapitulates the primary leukemia.
Overall, we have established both in vitro and in vivo system of cohesin mutant leukemia model. We determined that the abnormal chromatin remodeling driven by STAG2 and hyperactivity of FLI1 is the key dysfunction in Stag2/Npm1c co-mutant. Further studies include determining the phenotypic and chromatin response of FLI1 inhibition in STAG2 mutant models, which will pave the way to highlight new therapeutic potentials of cohesin mutant leukemia.
Disclosures: Viny: Arima Genomics: Consultancy, Current holder of stock options in a privately-held company, Membership on an entity's Board of Directors or advisory committees.