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230 Exploiting TCF3-Driven Oncogenic Circuits in Burkitt Lymphoma

Program: Oral and Poster Abstracts
Type: Oral
Session: 621. Lymphomas: Translational – Molecular and Genetic: Molecular Profiling and Targets in Aggressive Lymphomas
Hematology Disease Topics & Pathways:
Research, Combination therapy, Apoptosis, Translational Research, Lymphomas, Non-Hodgkin lymphoma, CHIP, B Cell lymphoma, Genomics, Diseases, Aggressive lymphoma, Treatment Considerations, Biological therapies, Immunotherapy, Immunology, Lymphoid Malignancies, Monoclonal Antibody Therapy, Biological Processes, Molecular biology
Saturday, December 7, 2024: 2:15 PM

Jens Löber1*, Nazli Serin2*, Salaheddine Ali2*, Petra Vockova3*, Marek Werth4*, Julia Richter5*, Marieluise Kirchner6*, Shashwat Sahay7*, Hanibal Bohnenberger8*, Kristyna Kupcova9*, Rebecca Wurm-Kuczera, MD2*, Claudia Chapuy10*, Kirsty Wienand10*, Kamil Bojarczuk10*, Viviane Grewe2*, Jenniffer Günther10*, Naveed Ishaque7*, Philipp Ströbel8*, Philipp Mertins, PhD6*, Ondrej Havranek, MD, PhD9, Wolfram Klapper, MD, Prof11*, Ulrich Keller2*, Tomas Etrych12*, Pavel Klener13* and Björn Chapuy2

1Charité, Berlin, Germany
2Hematology, Oncology and Cancer Immunology, Charité - University Medical Center Berlin, Campus Benjamin Franklin, Berlin, Germany
3Hematology, First Department of Medicine, University General Hospital and First Faculty of Medicine, Charles University Prague, Prague, Czech Republic
4University Hospital Frankfurt, Goethe University, Frankfurt Main, Germany
5Department of Pathology, Hematopathology Section and Lymph Node Registry, University Hospital Schleswig-Holstein, Campus Kiel, Kiel, Germany
6Core Unit Proteomics, Berlin Institute of Health at Charité, Universitätsmedizin Berlin and Max-Delbrück-Center for Molecular Medicine, Berlin, Germany
7Berlin Institute of Health at Charité - Universitätsmedizin Berlin, Digital Health Center, Berlin, Germany
8Institute of Pathology, University Medical Center Göttingen (UMG), Göttingen, Germany
9BIOCEV, First Faculty of Medicine, Charles University, Prague, Czech Republic
10Hematology and Medical Oncology, University Medical Center Göttingen (UMG), Göttingen, Germany
11Department of Pathology, Hematopathology Section, University Hospital Schleswig-Holstein, Campus Kiel, Kiel, Germany
12Institute of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, Prague, Czech Republic
131st Department of Medicine – Department of Hematology, First Faculty of Medicine, Charles University and General University Hospital in Prague, Prague, Czech Republic

Burkitt lymphoma (BL) is an aggressive B-cell lymphoma derived from transformed dark zone germinal center B cells. Intensive polychemotherapy in combination with the CD20-directed monoclonal antibody (mAb) rituximab is used as first-line therapy with high cure rates. The prognosis of patients significantly decreases in elderly and unfit patients or with relapsed/refractory disease, underscoring that novel, well-tolerated treatment options are an area of unmet medical need in BL.

Genetically, BLs are characterized by the t(8;14) translocation that juxtaposes the MYC oncogene to the immunoglobulin heavy chain locus (IGH), enhancing the MYC protein expression. Up to 70% of BL also exhibit mutations in TCF3 or its negative regulator, ID3, eventually activating the transcriptional activity of TCF3, also known as E2A. Since both genetic hallmark alterations in BL, MYC-translocation and TCF3 mutations, are currently undruggable, we aimed to identify the E2A-associated oncogenic circuits and exploit potentially druggable downstream targets.

Using chromatin immunoprecipitation sequencing (ChIP-Seq) for E2A in a panel of 10 preclinical BL cell lines, including two newly generated patient-derived BL cell lines (PDBLCL, UPF9T and UPF33P), and 5 diffuse large B-cell lymphoma (DLBCL) control cell lines, 3 germinal center B-cell-like DLBCL and 2 activated B-cell-like DLBCL, we identified the BL-specific E2A oncogenic transcriptional circuits. Pathway enrichment on the top 500 BL-specific ChIP-Seq peaks revealed, among others, frequent binding of E2A to the promoter of multiple components of the B-cell antigen receptor (BCR) signaling cascade. We confirmed the uniform expression of the proximal BCR signaling machinery, including CD79A, CD79B and CD19, and demonstrated functionality using western blot and calcium signaling following crosslinking of the BCR in all cell lines except Raji and UPF9T, which are lacking the BCR and served for subsequent functional experiments as a negative control. Subsequently, we targeted the BCR signaling cascade with inhibitors of proximal BCR signaling, including the PI3Kα/δ inhibitor copanlisib, and demonstrated sensitivity in all cell lines with functional BCR. Using BH3 profiling, we showed that most of the available BL cell lines and the BCR-positive UPF33P PDBLCL were MCL1 dependent and this MCL1 dependency was effectively targeted by PI3Kα/δ inhibition.

Interestingly, we found CD38 among the significant ChIP-Seq peaks, prompting us to follow up on its potential role as a druggable target in BL. First, we confirmed that BL exhibited the highest transcript abundance across 1400 cancer cell lines. We also confirmed that BL exhibited homogenously high expression of CD38 in 10 primary BL samples, compared to a panel of 238 other primary tumor tissues measured on tissue microarrays, including multiple myeloma, follicular lymphoma, DLBCL, mantle cell lymphoma, chronic lymphocytic leukemia, lymphoplasmacytoid lymphoma, marginal zone lymphoma, B-acute lymphoblastic leukemia, Hodgkin lymphoma and primary mediastinal B-cell lymphoma. Next, we confirmed with dual luciferase reporter constructs that CD38 is at least partly driven by hyperactive E2A. Besides E2A binding to the promoter region, we identified two intronic enhancer regions (Enh I and Enh II) that were bound by E2A in BL, underscoring that the binding to the promoter and both enhancer regions is essential for the high CD38 expression in BL. Most interestingly, using three novel patient-derived xenograft models of BL patients in NOD SCID gamma (NSG) mice, we demonstrated that a combination of the CD20- and CD38-directed mAbs, rituximab and daratumumab, significantly decreases tumor growth and increased overall survival of NSG mice compared to mice single agent treated or vehicle control. In addition, we developed a novel antibody-drug conjugate that linked the antineoplastic agent monomethyl auristatin E (MMAE) to daratumumab and demonstrated its applicability in vitro and in vivo.

Our functional genomics-based study revealed proximal inhibitors of BCR signaling and anti-CD38 antibodies as druggable TCF3-driven transcriptional targets in BL warranting further clinical testing. Finally, this study highlights the relevance of the approach to search for druggable downstream targets of undruggable, genetically-driven upstream regulators, which can also be applied to other diseases.

Disclosures: Klapper: Roche, Janssen, Amgen, InCyte: Research Funding. Klener: Sobi: Honoraria, Membership on an entity's Board of Directors or advisory committees, Speakers Bureau; Janssen: Honoraria, Membership on an entity's Board of Directors or advisory committees, Speakers Bureau; Roche: Research Funding; Lilly: Honoraria, Membership on an entity's Board of Directors or advisory committees, Speakers Bureau; Gilead: Honoraria, Membership on an entity's Board of Directors or advisory committees, Other: Travel Support, Speakers Bureau. Chapuy: AbbVie, Ars tempi, Astra Zeneca, BMS, Incyte, Janssen, Gilead, KML, Roche, Sobi, Ono: Honoraria; Sobi, Roche: Other: travel support ; AbbVie, Bristol Myers Squibb, Incyte, Janssen, Roche, and Sobi: Consultancy.

OffLabel Disclosure: We established the pre-clinical foundation to use anti CD38 agents in Burkitt Lymphoma. No clinical off-label use will be presented or suggested.

*signifies non-member of ASH