-Author name in bold denotes the presenting author
-Asterisk * with author name denotes a Non-ASH member
Clinically Relevant Abstract denotes an abstract that is clinically relevant.

PhD Trainee denotes that this is a recommended PHD Trainee Session.

Ticketed Session denotes that this is a ticketed session.

4928 Clonal Architecture of Donor-Derived Leukemia/Clonal Hematopoiesis after Allogeneic Hematopoietic Stem Cell Transplant

Program: Oral and Poster Abstracts
Session: 723. Allogeneic Transplantation: Long-term Follow-up, Complications, and Disease Recurrence: Poster III
Hematology Disease Topics & Pathways:
Research, Clinical Practice (Health Services and Quality), CHIP, Clinical Research, Hematopoiesis, Adverse Events, Biological Processes
Monday, December 9, 2024, 6:00 PM-8:00 PM

Gauri Wechalekar1,2*, Alia Cibich, BHSc (Hons)1,2*, Monika Kutyna, PhD1,2,3*, Naranie Shanmuganathan, MBBS, PhD, FRACP, FRCPA2,4, Usha Chandra Sekaran, MBBS, FRACP, FRCPA5*, Deepak Singhal, MBBS, MD, FRACP, FRCPA2,4*, Ashanka Mahilal Beligaswatte, BA, MBBS, MD, FRACP, FRCPA2, Leanne Purins6*, Christopher N. Hahn, PhD6,7*, David T Yeung, MBBS, PhD, BSc, FRACP, FRCPA2,3, Peter Bardy, MBBS2*, Duncan Purtill, MBBS, FRACP, FRCPA5*, Ashish Bajel, MBBS, FRACP, FRCPA8, Susan Branford, PhD6,7 and Devendra Hiwase, MD, MBBS, PhD, FRACP, FRCPA2,3

1Adelaide Medical School, Faculty of Health and Medical Sciences, University of Adelaide, Adelaide, SA, Australia
2Department of Haematology, Central Adelaide Local Health Network, Adelaide, SA, Australia
3South Australian Health and Medical Research Institute, Adelaide, SA, Australia
4South Australian Health and Medical Research Institute, Adelaide, Australia
5Haematology Department, Fiona Stanley Hospital, Murdoch, Western Australia, Australia
6SA Pathology, Adelaide, SA, Australia
7University of South Australia, Adelaide, SA, Australia
8Clinical Haematology, Royal Melbourne Hospital, Parkville, Australia

BACKGROUND: Donor derived leukemia (DDL) is a rare complication of allogeneic hematopoietic stem cell transplant (alloHSCT) with reported incidence ranging from 0.08% to 0.84% and median time to diagnosis 17 to 48 months post-alloHSCT (Aldos et al. Leuk lymphoma 2021). Prognosis of DDL is dismal, with median overall survival (OS) of 5 to 11 months (Engel et al. Leukemia 2019). Here, we report the incidence of DDL/CH at our centre and explore the clonal characteristics and kinetics of expansion in DDL/CH alloHSCT recipients and respective donors.

METHOD: We retrospectively screened all South Australian (SA) alloHSCT recipients surviving ≥1-year post-alloHSCT for persistent unexplained cytopenia between 2015 and 2021, inclusive. Persistent cytopenia was defined as Hb <13g/dL in males and <12g/dL in females, absolute neutrophil count <1.8x109/L, and/or platelets <150x109/L.

Recipients with relapse, extensive graft versus host disease (GVHD) requiring systemic immunosuppression or treatment related cytopenia were excluded. Additional cases of DDL/CH diagnosed clinically outside specified criteria were included for characterizing clonal architecture.

Donor hematopoiesis was confirmed by chimerism assay via PCR amplification of short tandem repeats, with donor chimerism ≥95% accepted as evidence of complete donor chimerism. Serial patient and sibling donor samples (when available) were screened by Next-Generation Sequencing to evaluate clonal architecture and expansion. Serial Bone Marrow Mesenchymal Stromal Cells (BMSC) were assessed.

RESULTS: 282 patients had alloHSCT between 2015 and 2021 and 35.5% (n=100) were alive for ≥1 years, without relapse or severe GVHD requiring immunosuppression. Persistent unexplained cytopenia was observed in 9% (n=9) of these patients and 3 cases were confirmed to have DDL/CH. In order to characterize the architecture and kinetics, 12 additional cases of DDL/CH (total cases: n=15) were confirmed, identified in SA recipients transplanted outside the study period (n=9) or at other centres (n=3).

Key findings include: (i) unexplained persistent cytopenia observed in 9% of alloHSCT survivors without moderate/severe cGVHD; (ii) DNMT3Amut and TET2mut were most prevalent (67%; n=10/15) mutations in DDL/CH cases; (iii) 50% (n=4/8) of DNMT3Amut DDL/CH had single DNMT3Amut whilst TET2mut DDL/CH had either multiple TET2mut or other co-mutations (iv) DNMT3Amut DDL/CH had a shorter latency (median 21.5; IQR 3.74 – 42 months) as compared to TET2mut DDL/CH (median 299; IQR 1.48 – 343 months); (v) clonal kinetics of expansion varied between individual clones within the same alloHSCT recipient: in one case of DDL where persistent unexplained cytopenia developed 25 years post-alloHSCT, we observed TET2mut(p.Cys1378Tyr) variant allele frequency (VAF) progressively increase from 0% to 40% across those 25 years, whilst SRSF2mut (p.Pro95His) was not detected until 23 years post-alloHSCT when it presented abruptly with a significant VAF of 36%; (vi) kinetics of CH expansion varied immensely between donor and recipient: we saw a DNMT3Amut (p.Gly543Cys) VAF increase from 12.5% to 47% over 53 months post-alloHSCT in a recipient who developed persistent unexplained cytopenia 42 months post-alloHSCT and progressed to AML. However, the VAF of the same clone in the hematologically-stable donor was only 12.65% after 60 months of stem cell donation; (vii) DDL can be due to in vivo CH engrafted donor cells: one of our cases was diagnosed with myelodysplastic syndrome with three distinct TET2mut 29 years post-alloHSCT in the setting of complete door chimerism. Surprisingly, none of these clones were detected in the donor sample whilst a different TET2mut (p.Ser82LysfsTer2) was detected at VAF of 6%; (viii) BMSCs from DDL patients exhibit high level of senescence (52-83% β-galactosidase + cells), defective proliferative, and clonogenic potential, and aberrant differentiation capacity well before the diagnosis of DDL.

CONCLUSION: Persistent unexplained cytopenia was detected in 9% of long-term transplant survivors. We observed unique differences in kinetics of DNMT3Amut and TET2mut clones and identified two distinct mechanisms of DDL; CH can be inadvertently transferred during alloHSCT or can be developed in vivo in engrafted donor cells. Finally, highly senescent BMSCs secrete highly pro-inflammatory cytokines that are conducive for expansion of aberrant clones.

Disclosures: Shanmuganathan: Janssen: Honoraria, Other: travel support; Novartis: Honoraria, Other: travel support, Research Funding; Takeda: Honoraria; Enliven: Other: travel support. Yeung: Novartis: Honoraria, Research Funding; Ascentage: Honoraria; Takeda: Honoraria; Amgen: Honoraria; BMS: Research Funding; Pfizer: Honoraria. Bajel: Astellas: Honoraria, Membership on an entity's Board of Directors or advisory committees; Glaxo-Smith-Kline: Membership on an entity's Board of Directors or advisory committees; Novartis: Honoraria; Pfizer: Honoraria; Takeda: Honoraria; Amgen: Honoraria, Membership on an entity's Board of Directors or advisory committees, Speakers Bureau; AbbVie: Membership on an entity's Board of Directors or advisory committees. Branford: Cepheid: Research Funding; Terns Pharmaceuticals: Research Funding; Novartis: Honoraria, Research Funding, Speakers Bureau. Hiwase: Abbvie: Honoraria; Astella Pharma: Honoraria; Otsuka: Honoraria.

*signifies non-member of ASH